mzdbConverter / msDataConverter


Command line tool to convert Thermo “.raw” files or Brucker “.d” directories to mzdb files.
This tools may also be used as an API for development to access some ThermoFisher acquisition metadata

Two manufacturer are actually supported: ThermoFisher and Bruker, use thermo or bruker option respectively.
The –help list options according to the specified input file format (thermo / bruker)

Available options for Thermo Fisher raw files : mzdb_convert help

Available options for Bruker .d folders : mzdb_convert help

Repositories

  • msDataConverter   
    • The main repository creates the final distribution but it includes other modules listed here.
  • msDataConsumer   
    • This module is used to get msData information in order to process it. It starts a Socket Server on specific port, and delegated process to appropriated consumer
      • to mzdb writer to convert msData to mzdb File.
      • to metadata controller to create acquisition file Metadata for callbacks implementations
  • ThermoAccess   
    • This module, written in C#, is a Thermo Fisher raw file reader. It used ThermoFisher.CommonCore package. The read data is sent on serializer socket server, unless read-only parameter is specified

*To be dispatched in files *
Several projects deal with file formats and their conversion or generation.
See repositories with fileformats topics

EDyP Projects

  • EDyP team

EDyP laboratory computational proteomics projects

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