The server() function of the module `nav_process`

The module navigation can be launched via a Shiny app. This is the core module of MagellanNTK

Usage

nav_process_ui(id)

nav_process_server(
  id = NULL,
  dataIn = reactive({
     NULL
 }),
  status = reactive({
     NULL
 }),
  is.enabled = reactive({
     TRUE
 }),
  remoteReset = reactive({
     0
 }),
  remoteResetUI = reactive({
     0
 }),
  is.skipped = reactive({
     FALSE
 }),
  verbose = FALSE,
  usermod = "user"
)

nav_process()

Arguments

id

A `character(1)` which defines the id of the module. It is the same as for the ui() function.

dataIn

An instance of the `SummarizedExperiment` class

status

A boolean which indicates whether the current status of the process

is.enabled

A `boolean`. This variable is a remote command to specify if the corresponding module is enabled/disabled in the calling module of upper level. For example, if this module is part of a pipeline and the pipeline calculates that it is disabled (i.e. skipped), then this variable is set to TRUE. Then, all the widgets will be disabled. If not, the enabling/disabling of widgets is deciding by this module.

remoteReset

An `integer` which acts as a remote command to reset the module. Its value is incremented on a external event and it is used to trigger an event in this module

remoteResetUI

An `integer` which acts as a remote command to reset the UI part of the module Its value is incremented on a external event and it is used to trigger an event in the module

is.skipped

A `boolean` which indicates whether the pipeline or process is skipped (TRUE) or not (FALSE)

verbose

A `boolean` to indicate whether to turn off (FALSE) or ON (TRUE) the verbose mode for logs.

usermod

A `character()` to specifies the running mode of MagellanNTK: 'user' (default) or 'dev'. For more details, please refer to the document 'Inside MagellanNTK'

Value

A shiny App

Author

Samuel Wieczorek

Examples

if (interactive()) {
    nav_process()
}