Package index • MagellanNTK

All functions

Add2History(): Get the last validated step before current position.
BuildData2Send(): Builds a vector of data
Config() initialize(<Config>): Config class definition
Discover_Skipped_Steps(): Discover Skipped Steps
GetExtension(): Get file extension
GetFirstMandatoryNotValidated(): Get the first mandatory step not validated
GetHistory(): Get the history of an assay
GetListDatasets(): Get datasets from packages which owns datasets of a given class
GetMaxValidated_AllSteps(): Get the last validated step
GetMaxValidated_BeforePos(): Get the last validated step before current position.
GetPackageVersion(): Get the version of a package installed in the local R distribution
InitializeHistory(): Get the last validated step before current position.
Insert_Call_to_Config(): Insert source code for config()
NavPage(): Move the position of the cursor
SetCurrentPosition(): Get the position of the last validated item
SetHistory(): Standardize names
Timestamp(): Timestamp in UNIX format.
ToggleState_NavBtns(): Updates the state of navigation buttons
ToggleState_Screens(): Updates the status of steps in a given range
UpdateStepsStatus(): Update the status of steps in a pipeline nor process.
Update_State_Screens(): Update the status enabled/disabled of the steps of a pipeline/process
call.func(): Wrapper to the function `do.call`
`%AND%` is.Windows() is.Linux() is.Darwin() file.sep() choose.dir() choose.dir.darwin() choose.dir.linux() choose.dir.windows(): Choose a Folder Interactively
addDatasets() keepDatasets(): Datasets processing
default.funcs() default.base.URL() default.workflow() default.layout default.theme(): Default variables used in MagellanNTK
directoryInput(): Directory Selection Control
download_dataset_ui() download_dataset_server() download_dataset(): dl
errorModal_ui() errorModal_server() errorModal(): Error modal shiny module.
format_DT_ui() format_DT_server() format_DT(): format_DT_ui and format_DT_server
open_dataset_ui() open_dataset_server() open_dataset(): Change the default functions in `MagellanNTK`
.port stepStatus default_pos listBrewerPalettes: Global variables
initComplete(): Initialisation function for DT
Get_Code_Update_Config_Variable() Get_Code_Declare_widgets() Get_Code_Declare_rv_custom() Get_Code_for_ObserveEvent_widgets() Get_Code_for_rv_reactiveValues() Get_Code_for_dataOut() Get_Code_for_General_observeEvents() Get_Code_for_remoteReset() Get_Code_for_resetting_widgets() Get_Code_for_resetting_custom() Module_Return_Func() AdditionnalCodeForExternalModules() Get_Workflow_Core_Code() Get_AdditionalModule_Core_Code(): R code to update the 'config' variable of a process module
is.substr(): Substring test
lldata: lldata dataset
lldata1: lldata1 dataset
lldata12: lldata12 dataset
lldata123: lldata123 dataset
MagellanNTK_ui() MagellanNTK_server() MagellanNTK(): Main Shiny application
mod_errorModal_ui() mod_errorModal_server() mod_errorModal(): A modal window to display messages
mod_homepage_ui() mod_homepage_server() mod_homepage(): mod_homepage_ui and mod_homepage_server
insert_md_ui() insert_md_server() insert_md(): insert_md_ui and insert_md_server
mod_launch_magellan_ui() mod_launch_magellan_server() mod_launch_magellan(): launch_magellan UI Function
mainapp_ui() mainapp_server() mainapp(): mod_main_page_ui and mod_loading_page_server
mod_modalDialog_ui() mod_modalDialog_server() mod_modalDialog(): Predefined modal with embeded shiny module
open_workflow_ui() open_workflow_server() open_workflow(): mod_open_workflow_ui and mod_open_workflow_server
mod_popover_for_help_ui() mod_popover_for_help_server() popover_for_help(): Opens a small tooltip info over a widget.
mod_release_notes_ui() mod_release_notes_server() release_notes(): mod_release_notes_ui and mod_release_notes_server
mod_SweetAlert_ui() mod_SweetAlert_server() mod_SweetAlert(): A shiny app to display a modal
module.exists(): Checks if a Shiny module is loaded
nav_pipeline_ui() nav_pipeline_server() nav_pipeline(): Shiny module `nav_pipeline()`
nav_process_ui() nav_process_server() nav_process(): The server() function of the module `nav_process`
nav_single_process_ui() nav_single_process_server() nav_single_process(): Shiny module `nav_single_process()`
pkgs.require(): Loads packages
process_layout() process_layout_process() process_layout_pipeline(): Layout for workflows
readConfigFile(): Read pipelines configuration files
readDirectoryInput(): Read the value of a directoryInput
runDirinputExample(): Runs a demo app with the code
show(<Config>): Prints the content of a `Config` class
Insert_User_Sidebar(): Sidebar functions
source_shinyApp_files(): Source ui.R, server.R ang global.R files
source_wf_files(): Source workflow files
timeline_process_ui() timeline_process_server() timeline_process() timeline_pipeline_ui() timeline_pipeline_server() timeline_pipeline(): Shiny module for the process timeline
toggleWidget(): Hide/show a widget w.r.t a condition.
updateDirectoryInput(): Change the value of a directoryInput on the client
view_dataset_ui() view_dataset_server() view_dataset(): mod_open_demo_dataset_ui and mod_open_demo_dataset_server