R code to update the 'config' variable of a process module

This function generates the necessary code to modify the variable 'config' (slots steps and mandatory). It adds a 'Description' step and a TRUE value at the beginning of the 'steps' and 'mandatory' list, erases all white spaces for the names of the steps.

This function generates the necessary code to modify the variable 'config' (slots steps and mandatory). It adds a 'Description' step and a TRUE value at the beginning of the 'steps' and 'mandatory' list, erases all white spaces for the names of the steps.

This function create the source code needed inside a module to declare the reactive variable called 'widgets.default.values'. # Declaration of the variables that will contain the values of the widgets To avoid confusion, the first string is the name of the step while the second is the name of the widget

This function create the source code needed inside a module to declare the reactive variable called 'rv.custom.default.values'. # Declaration of the variables that will contain the values of the user variables. To avoid confusion, the first string is the name of the step while the second is the name of the widget

Returned value of the process

This function generates dynamically the observeEvent function for each widget

Usage

Get_Code_Update_Config_Variable()

Get_Code_Declare_widgets(widgets.names = NULL)

Get_Code_Declare_rv_custom(rv.custom.names = NULL)

Get_Code_for_ObserveEvent_widgets(widgets.names = NULL)

Get_Code_for_rv_reactiveValues()

Get_Code_for_dataOut()

Get_Code_for_General_observeEvents()

Get_Code_for_remoteReset(
  widgets = TRUE,
  custom = TRUE,
  dataIn = "dataIn()",
  addon = ""
)

Get_Code_for_resetting_widgets()

Get_Code_for_resetting_custom()

Module_Return_Func()

AdditionnalCodeForExternalModules(w.names = NULL, rv.custom.names = NULL)

Get_Workflow_Core_Code(
  mode = NULL,
  name = NULL,
  w.names = NULL,
  rv.custom.names = NULL
)

Get_AdditionalModule_Core_Code(w.names = NULL, rv.custom.names = NULL)

Arguments

widgets.names

A `vector` containing the names of the widgets in all steps of the module.

rv.custom.names

A `vector` containing the names of the custom variables in all steps of the module.

widgets

A `list` containing the names of the widgets in all steps of the module with their default values

custom

A `list` of the custom variables used in the process. Each custom variable is accompanied with its default value

dataIn

An instance of the `MultiAssayExperiment` or `SummarizedExperiment` classes

addon

Additional code for the `observeEvent()` function which catches the `remoteReset()` action.

w.names

Same as widgets.names

mode

A `character()` which indicates whether the current module is used as a 'process' nor a 'pipeline.' Default value is NULL

name

The Shiny id of the process or pipeline

Value

A `string` containing some R code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `string` containing some R code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

A `character()` containing R source code

Author

Samuel Wieczorek