Metacell function

Create metacell

Usage

BuildMetacell(from = NULL, level, qdata = NULL, conds = NULL, df = NULL)

Arguments

from

A string designing the software used, either "maxquant", "proline" or "DIA-NN"

level

A string designing the type of entity/pipeline. Available values are: peptide, protein

qdata

A matrix of quantitative data

conds

A 1-col dataframe with the condition associated to each sample.

df

A data.frame which contains the type of identification of the entities. It must have the same dimensions as qData.

Value

NA

Author

Samuel Wieczorek

Examples

data(subR25pept)
conds <- design.qf(subR25pept)$Condition
qdata <- SummarizedExperiment::assay(subR25pept[[2]])
metacell1 <- BuildMetacell('maxquant', 'peptide', qdata, conds)
metacell2 <- BuildMetacell('proline', 'peptide', qdata, conds)