Computes the detailed number of peptides used for aggregating each protein

Method to compute the detailed number of quantified peptides used for aggregating each protein

Usage

GetDetailedNbPeptidesUsed(pepData, X)

Arguments

pepData

A data.frame of quantitative data

X

An adjacency matrix

Value

A list of two items

Author

Samuel Wieczorek

Examples

if (FALSE) { # \dontrun{
library(SummarizedExperiment)
data(Exp1_R25_pept, package="DaparToolshedData")
obj.pep <- Exp1_R25_pept[seq_len(10)]
last.obj <- obj.pep[[length(obj.pep)]]
X <- BuildAdjacencyMatrix(last.obj)
ll.n <- GetDetailedNbPeptidesUsed(assay(last.obj), X)
} # }