Sets the metacell dataframe for datasets which are from Dia-NN software

Actually, this function uses the generic function to generate metacell info

Usage

Metacell_DIA_NN(qdata, conds, df, level = NULL)

Arguments

qdata

An object of class MsnSet

conds

A 1-col dataframe with the condition associated to each sample.

df

A dataframe with the same dimension as qdata containing the metacell.

level

A string designing the type of entity/pipeline. Available values are: peptide, protein

Value

NA

Author

Samuel Wieczorek

Examples

data(subR25pept)
conds <- design.qf(subR25pept)$Condition
qdata <- SummarizedExperiment::assay(subR25pept[[2]])
df <- Metacell_DIA_NN(qdata, conds, df, level = "peptide")