Shiny module `nav_single_process()` — nav_single

The module navigation can be launched via a Shiny app. This is the core module of MagellanNTK

Usage

nav_single_process_ui(id)

nav_single_process_server(
  id = NULL,
  dataIn = reactive({
     NULL
 }),
  status = reactive({
     NULL
 }),
  remoteResetUI = reactive({
     0
 }),
  is.enabled = TRUE,
  is.skipped = FALSE,
  verbose = FALSE,
  usermod = "user",
  sendDataIfReset = TRUE
)

nav_single_process()

Arguments

id: A `character(1)` which defines the id of the module. It is the same as for the server() function.
dataIn: An instance of the `SummarizedExperiment` class
status: A boolean which indicates whether the current status of the process
remoteResetUI: An `integer` which acts as a remote command to reset the UI part of the module Its value is incremented on a external event and it is used to trigger an event in the module
is.enabled: A `boolean`. This variable is used as a remote command to specify if the corresponding module is enabled/disabled in the calling module of upper level. For example, if this module is disabled, then this variable is set to TRUE. Then, all the widgets will be disabled. If not, the enabling/disabling of widgets is deciding by this module.
is.skipped: A `boolean` which indicates whether the pipeline or process is skipped (TRUE) or not (FALSE)
verbose: A `boolean` to indicate whether to turn off (FALSE) or ON (TRUE) the verbose mode for logs.
usermod: A `character()` to specifies the running mode of MagellanNTK: 'user' (default) or 'dev'. For more details, please refer to the document 'Inside MagellanNTK'
sendDataIfReset: A `boolean` to indicate if the reseted value must be send to the caller in case of reseting the process. This is usefule for example for the Convert process

Value

A shiny App

Author

Samuel Wieczorek

Examples

if (interactive()) {
    nav_single_process()
}